Variant report

Variant	rs9874291
Chromosome Location	chr3:134608364-134608365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134606424..134609359-chr3:134641100..134643520,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10935140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706968	0.81[JPT][hapmap]
rs12489360	0.91[JPT][hapmap]
rs12630436	0.83[JPT][hapmap]
rs13068347	0.91[JPT][hapmap]
rs13073341	0.91[JPT][hapmap]
rs13078595	0.91[JPT][hapmap]
rs13078906	0.91[JPT][hapmap]
rs13079457	0.81[JPT][hapmap]
rs1399706	0.91[JPT][hapmap]
rs1399707	0.81[JPT][hapmap];0.82[YRI][hapmap]
rs1399710	0.91[JPT][hapmap]
rs1515359	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1515364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1515366	0.91[JPT][hapmap]
rs1515367	0.81[JPT][hapmap]
rs2280157	0.91[JPT][hapmap]
rs2895696	0.91[JPT][hapmap]
rs4955458	0.91[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4955508	0.91[JPT][hapmap]
rs4955510	0.90[JPT][hapmap]
rs4955511	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6439530	0.91[JPT][hapmap]
rs6439535	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762261	0.81[JPT][hapmap]
rs6762621	0.91[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs6772947	0.81[JPT][hapmap]
rs6779978	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789449	0.81[JPT][hapmap]
rs6789763	0.81[JPT][hapmap]
rs6793377	0.91[JPT][hapmap]
rs6796514	0.81[JPT][hapmap]
rs6802089	0.81[JPT][hapmap]
rs7639520	0.91[JPT][hapmap]
rs7639843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643782	0.91[JPT][hapmap]
rs7645886	0.91[JPT][hapmap]
rs7653227	0.81[JPT][hapmap]
rs868130	0.91[JPT][hapmap]
rs884381	0.91[JPT][hapmap]
rs885594	0.81[JPT][hapmap]
rs938382	0.91[JPT][hapmap]
rs9814692	0.90[JPT][hapmap]
rs9819889	0.91[JPT][hapmap]
rs9825632	0.91[JPT][hapmap]
rs9825687	0.91[JPT][hapmap]
rs9839573	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9846488	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9851596	0.91[JPT][hapmap]
rs9868348	0.91[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9874607	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134599800-134613400	Weak transcription	Fetal Brain Female	brain
2	chr3:134605000-134609800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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