Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10935140	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11706968	0.86[JPT][hapmap]
rs1399707	0.81[JPT][hapmap]
rs1399710	0.86[JPT][hapmap]
rs1515364	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2895696	0.81[JPT][hapmap]
rs4955458	0.93[JPT][hapmap]
rs4955508	0.82[JPT][hapmap]
rs4955511	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6439535	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6762621	0.81[JPT][hapmap]
rs6779978	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6786490	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7639520	0.80[JPT][hapmap]
rs7639843	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs868130	0.81[JPT][hapmap]
rs884381	0.82[JPT][hapmap]
rs938382	0.81[JPT][hapmap]
rs9819889	0.81[JPT][hapmap]
rs9839573	0.96[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9851596	0.81[JPT][hapmap]
rs9868348	0.87[JPT][hapmap]
rs9874291	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134610800-134617400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:134611200-134616200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:134611400-134619600	Weak transcription	GM12878-XiMat	blood
4	chr3:134612200-134622000	Weak transcription	Brain Germinal Matrix	brain
5	chr3:134612800-134615000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:134613800-134616400	Weak transcription	Fetal Brain Female	brain
7	chr3:134614000-134617200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:134614000-134620800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:134614600-134622000	Weak transcription	Brain Anterior Caudate	brain

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