Variant report

Variant	rs4955458
Chromosome Location	chr3:134610330-134610331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10935140	0.93[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11706968	0.93[JPT][hapmap]
rs12489360	0.81[JPT][hapmap]
rs12695618	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13078906	0.81[JPT][hapmap]
rs1399706	0.81[JPT][hapmap]
rs1399707	0.93[JPT][hapmap]
rs1399710	0.96[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515359	0.93[JPT][hapmap]
rs1515364	0.86[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs1515366	0.81[JPT][hapmap]
rs1515367	0.87[JPT][hapmap]
rs2895696	0.87[JPT][hapmap]
rs4955508	0.87[JPT][hapmap]
rs4955510	0.80[JPT][hapmap]
rs6439535	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6762621	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6779978	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6786490	0.93[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6789763	0.87[JPT][hapmap]
rs6793377	0.81[JPT][hapmap]
rs7639520	0.87[JPT][hapmap]
rs7639843	0.93[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7643782	0.81[JPT][hapmap]
rs7645886	0.81[JPT][hapmap]
rs868130	0.87[JPT][hapmap]
rs884381	0.87[JPT][hapmap]
rs938382	0.87[JPT][hapmap]
rs9814692	0.80[JPT][hapmap]
rs9819889	0.87[JPT][hapmap]
rs9825687	0.81[JPT][hapmap]
rs9839573	0.93[JPT][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9846488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851596	0.87[JPT][hapmap]
rs9868348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874291	0.91[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9874607	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134599800-134613400	Weak transcription	Fetal Brain Female	brain
2	chr3:134609200-134611400	Weak transcription	Brain Germinal Matrix	brain
3	chr3:134609800-134610800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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