Variant report

Variant	rs11706968
Chromosome Location	chr3:134597632-134597633
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10935140	0.85[JPT][hapmap]
rs12489360	0.86[JPT][hapmap]
rs12489463	0.80[CHB][hapmap]
rs12630436	0.81[JPT][hapmap]
rs13068347	0.85[JPT][hapmap]
rs13072597	0.80[CHB][hapmap]
rs13073341	0.81[JPT][hapmap]
rs13078906	0.86[JPT][hapmap]
rs13079457	0.90[CHB][hapmap];0.82[YRI][hapmap]
rs1399706	0.87[JPT][hapmap]
rs1399707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399710	0.84[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs1515359	0.86[JPT][hapmap]
rs1515364	0.86[JPT][hapmap]
rs1515366	0.87[JPT][hapmap];0.87[YRI][hapmap]
rs1515367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280157	0.81[JPT][hapmap]
rs2895696	0.93[JPT][hapmap]
rs35287767	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4955458	0.93[JPT][hapmap]
rs4955508	0.93[JPT][hapmap]
rs4955510	0.86[JPT][hapmap]
rs6439529	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs6439530	0.86[JPT][hapmap]
rs6762261	0.90[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs6762621	0.93[JPT][hapmap]
rs6786490	0.85[JPT][hapmap]
rs6789763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6793377	0.86[JPT][hapmap]
rs6793813	0.80[CHB][hapmap]
rs7639520	0.93[JPT][hapmap]
rs7639843	0.85[JPT][hapmap]
rs7643782	0.86[JPT][hapmap]
rs7645886	0.86[JPT][hapmap]
rs868130	0.93[JPT][hapmap]
rs884381	0.93[JPT][hapmap]
rs938382	0.93[JPT][hapmap]
rs9819889	0.93[JPT][hapmap]
rs9825632	0.81[JPT][hapmap]
rs9825687	0.87[JPT][hapmap]
rs9839573	0.85[JPT][hapmap]
rs9851596	0.93[JPT][hapmap]
rs9868348	0.93[JPT][hapmap]
rs9874291	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134589000-134602600	Weak transcription	Psoas Muscle	Psoas
2	chr3:134592800-134598000	Enhancers	GM12878-XiMat	blood
3	chr3:134594200-134598800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:134594400-134598800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:134594400-134604600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:134595000-134598800	Weak transcription	Brain Anterior Caudate	brain
7	chr3:134595600-134597800	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:134595800-134602600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:134596400-134597800	Weak transcription	Brain Angular Gyrus	brain
10	chr3:134597000-134597800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:134597000-134599400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:134597000-134602600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:134597000-134602600	Weak transcription	Fetal Brain Male	brain
14	chr3:134597600-134600000	Enhancers	Brain Hippocampus Middle	brain

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