Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11706968	0.80[CHB][hapmap]
rs13072597	0.94[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072762	0.84[ASN][1000 genomes]
rs13073658	0.81[JPT][hapmap]
rs13079457	0.81[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1399707	0.80[CHB][hapmap]
rs1515367	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs2280156	0.84[ASN][1000 genomes]
rs34287501	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34640730	0.81[ASN][1000 genomes]
rs60531499	0.81[ASN][1000 genomes]
rs6439529	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs6762261	0.81[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap]
rs6772947	0.82[JPT][hapmap]
rs6782516	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs6785725	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789763	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs6793813	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797353	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634094	0.90[CHB][hapmap]
rs885594	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134549800-134569400	Weak transcription	Fetal Brain Male	brain
2	chr3:134558600-134563200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:134558600-134565400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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