Variant report

Variant	rs34287501
Chromosome Location	chr3:134565788-134565789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134550436..134552836-chr3:134565260..134567786,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12489463	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13072597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13072762	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13079457	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2280156	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34640730	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60531499	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6439529	0.82[EUR][1000 genomes]
rs6762261	0.82[EUR][1000 genomes]
rs6785725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6793813	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6797353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134549800-134569400	Weak transcription	Fetal Brain Male	brain
2	chr3:134564400-134566200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:134564400-134566800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:134564600-134566200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:134564600-134568200	Weak transcription	GM12878-XiMat	blood
6	chr3:134564600-134568600	Weak transcription	Psoas Muscle	Psoas
7	chr3:134564800-134566600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:134564800-134567200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:134565000-134566600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:134565000-134566800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:134565000-134567200	Enhancers	HUVEC	blood vessel
12	chr3:134565200-134566600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:134565200-134566600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:134565200-134566800	Enhancers	HepG2	liver
15	chr3:134565200-134566800	Enhancers	HMEC	breast
16	chr3:134565200-134566800	Enhancers	NH-A	brain
17	chr3:134565200-134566800	Enhancers	NHDF-Ad	bronchial
18	chr3:134565400-134566000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:134565400-134566200	Enhancers	Fetal Muscle Trunk	muscle
20	chr3:134565400-134566600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:134565400-134566600	Enhancers	Fetal Muscle Leg	muscle
22	chr3:134565400-134566600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr3:134565400-134566600	Enhancers	Stomach Mucosa	stomach
24	chr3:134565400-134566600	Enhancers	HSMM	muscle
25	chr3:134565400-134566800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:134565400-134566800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:134565600-134565800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:134565600-134566000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:134565600-134566000	Flanking Active TSS	Osteobl	bone
30	chr3:134565600-134566200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:134565600-134566600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr3:134565600-134566600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:134565600-134566600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr3:134565600-134569600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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