Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12489463	0.81[ASN][1000 genomes]
rs13072597	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13072762	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13073658	0.83[AFR][1000 genomes]
rs13079457	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13090529	0.83[AFR][1000 genomes]
rs13090749	0.83[AFR][1000 genomes]
rs13090758	0.83[AFR][1000 genomes]
rs13091440	0.83[AFR][1000 genomes]
rs2280156	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2292660	0.81[AFR][1000 genomes]
rs34287501	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34640730	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34894066	0.83[AFR][1000 genomes]
rs6439529	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6762261	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6785725	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6793813	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6797336	0.83[AFR][1000 genomes]
rs6797353	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134567200-134576000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:134570000-134582800	Weak transcription	Psoas Muscle	Psoas
3	chr3:134571600-134581400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:134571800-134575800	Weak transcription	Fetal Brain Male	brain
5	chr3:134573400-134576400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:134573600-134575800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:134573600-134578000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:134573800-134575800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:134574200-134577200	Weak transcription	Fetal Brain Female	brain
10	chr3:134575200-134575600	Weak transcription	GM12878-XiMat	blood
11	chr3:134575200-134576200	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search: