Variant report
Variant | rs34902296 |
---|---|
Chromosome Location | chr3:34880796-34880797 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1021292 | 0.84[EUR][1000 genomes] |
rs11707660 | 0.85[EUR][1000 genomes] |
rs11709953 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11719120 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs13059060 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs13063151 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13069916 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs13070070 | 0.83[EUR][1000 genomes] |
rs13079059 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs13082803 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs13083386 | 0.87[EUR][1000 genomes] |
rs13092769 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs13322785 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17288582 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2019981 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs34917865 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs729046 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834654 | chr3:34747802-34916657 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv834655 | chr3:34752929-34898824 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | esv3415700 | chr3:34806371-34914306 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | esv3408584 | chr3:34838963-34881489 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
5 | nsv432407 | chr3:34869616-34898125 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:34880000-34884800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |