Variant report

Variant	rs11709953
Chromosome Location	chr3:34882436-34882437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1021292	0.84[EUR][1000 genomes]
rs11707660	0.85[EUR][1000 genomes]
rs11715798	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs11719120	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13059060	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13063151	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069916	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13070070	0.83[EUR][1000 genomes]
rs13079059	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13082803	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13083386	0.87[EUR][1000 genomes]
rs13092769	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13322785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17288582	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2019981	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34902296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34917865	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6794100	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs729046	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv432407	chr3:34869616-34898125	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34880000-34884800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:34881600-34883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:34881600-34884200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:34881600-34884200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:34881600-34884600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:34881600-34884800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:34881600-34885000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:34881800-34884000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:34882400-34882600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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