Variant report
| Variant | rs6794100 |
|---|---|
| Chromosome Location | chr3:34911582-34911583 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr3:34911511-34911832 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| FECHP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11715798 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12491140 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12492457 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13070070 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13079059 | 0.87[EUR][1000 genomes] |
| rs13084909 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13092769 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1589640 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2091030 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs34917865 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs61558461 | 0.80[ASN][1000 genomes] |
| rs7652392 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9311079 | 0.98[ASN][1000 genomes] |
| rs9311080 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834654 | chr3:34747802-34916657 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3415700 | chr3:34806371-34914306 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv590052 | chr3:34910172-34937547 | Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
