Variant report
| Variant | rs13084909 |
|---|---|
| Chromosome Location | chr3:34914647-34914648 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ARPP21-2 | chr3:34914133-34915346 | NONHSAT088963 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11715798 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12491140 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12492457 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13070070 | 0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13079059 | 0.87[EUR][1000 genomes] |
| rs13092769 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1589640 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2091030 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34917865 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61558461 | 0.81[ASN][1000 genomes] |
| rs6794100 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7652392 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9311079 | 1.00[ASN][1000 genomes] |
| rs9311080 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834654 | chr3:34747802-34916657 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv590052 | chr3:34910172-34937547 | Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs13084909 | GOLGA4 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
