Variant report

Variant	rs9311080
Chromosome Location	chr3:34915171-34915172
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11715798	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12491140	0.91[ASN][1000 genomes]
rs12492457	0.95[ASN][1000 genomes]
rs13070070	0.89[ASN][1000 genomes]
rs13084909	1.00[ASN][1000 genomes]
rs13092769	0.82[ASN][1000 genomes]
rs1589640	0.94[ASN][1000 genomes]
rs2091030	0.94[ASN][1000 genomes]
rs34917865	0.82[ASN][1000 genomes]
rs61558461	0.81[ASN][1000 genomes]
rs6794100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7652392	0.98[ASN][1000 genomes]
rs9311079	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv590052	chr3:34910172-34937547	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9311080	DYNC1LI1	cis	parietal	SCAN
rs9311080	ACAA1	cis	cerebellum	SCAN
rs9311080	CTDSPL	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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