Variant report

Variant	rs12492457
Chromosome Location	chr3:34960417-34960418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11715798	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12491140	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13070070	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13084909	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1589640	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2091030	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6794100	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7652392	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9311079	0.95[ASN][1000 genomes]
rs9311080	0.95[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34959800-34960600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:34960000-34961200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:34960400-34960800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:34960400-34961000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:34960400-34963000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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