Variant report

Variant	rs34918566
Chromosome Location	chr15:77788821-77788822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:77788815..77791032-chr15:77793939..77797001,3	MCF-7	breast:
2	chr15:77410555..77412418-chr15:77788437..77789768,11	K562	blood:
3	chr15:77780057..77783537-chr15:77786052..77789166,3	MCF-7	breast:
4	chr15:77788121..77789886-chr15:77835389..77836306,7	MCF-7	breast:
5	chr15:77784203..77785703-chr15:77787241..77788880,2	K562	blood:
6	chr15:77399717..77400658-chr15:77788766..77789797,3	MCF-7	breast:
7	chr15:77787874..77789413-chr15:77817230..77819367,2	MCF-7	breast:
8	chr15:77781373..77783585-chr15:77787780..77790261,2	K562	blood:
9	chr15:77787813..77789650-chr15:77801931..77804877,2	K562	blood:
10	chr15:77787983..77789966-chr15:77835290..77836892,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259362	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10519165	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10519166	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12898506	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12898522	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12901298	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12905548	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12905890	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12906093	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12906155	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12906220	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12909547	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12909771	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12910225	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12911362	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12912739	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12914885	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12917103	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12917143	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12917211	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12917347	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12917359	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16968817	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16968829	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16968848	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16968851	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17384857	0.81[EUR][1000 genomes]
rs17386174	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17469938	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17471280	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17471809	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17472416	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1949269	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2036896	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2864841	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34023254	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34137991	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34158220	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34197100	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34237392	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34344208	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34410684	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34607003	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34660075	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34664675	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34665451	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34690222	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34772392	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34858590	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34905779	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35015654	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35277326	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35347401	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35383172	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35420345	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35450609	0.83[AMR][1000 genomes]
rs35628983	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35775156	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35778082	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35834995	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35892909	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36103772	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4288963	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4349115	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62007266	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62007269	0.88[AMR][1000 genomes]
rs62007303	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62007307	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62007310	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62007313	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62007316	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62007337	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62007338	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62007339	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62007340	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62007343	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62010561	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62010567	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72742499	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8031202	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs907399	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv570140	chr15:77787469-77851535	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34918566	SGK269	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77770000-77789200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:77776200-77789000	Weak transcription	Colonic Mucosa	Colon
3	chr15:77777600-77789000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:77777600-77789400	Weak transcription	Aorta	Aorta
5	chr15:77777600-77789800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:77777600-77798600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:77777800-77789000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:77777800-77789000	Weak transcription	A549	lung
9	chr15:77779600-77789000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:77780000-77789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:77780000-77789400	Weak transcription	Gastric	stomach
12	chr15:77780200-77789000	Weak transcription	NHEK	skin
13	chr15:77784800-77789000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:77785200-77789400	Enhancers	Right Atrium	heart
15	chr15:77785200-77792200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:77785400-77789000	Enhancers	NHDF-Ad	bronchial
17	chr15:77785400-77789400	Enhancers	NH-A	brain
18	chr15:77785400-77789400	Enhancers	NHLF	lung
19	chr15:77785400-77791600	Enhancers	Fetal Kidney	kidney
20	chr15:77785600-77792400	Enhancers	Fetal Muscle Leg	muscle
21	chr15:77786000-77789000	Enhancers	Adipose Nuclei	Adipose
22	chr15:77786200-77789000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:77786200-77789000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:77786200-77789000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:77786200-77789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:77786200-77792200	Enhancers	Fetal Lung	lung
27	chr15:77786200-77793400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:77786200-77794000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:77786200-77800000	Weak transcription	Thymus	Thymus
30	chr15:77786400-77789000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr15:77786400-77789000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr15:77786400-77789000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:77786400-77789000	Weak transcription	K562	blood
34	chr15:77786400-77789200	Weak transcription	GM12878-XiMat	blood
35	chr15:77786400-77799600	Weak transcription	Primary B cells from cord blood	blood
36	chr15:77786400-77803800	Weak transcription	Primary T cells from cord blood	blood
37	chr15:77786600-77789000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:77786800-77789000	Weak transcription	Psoas Muscle	Psoas
39	chr15:77787000-77789600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:77787200-77789000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr15:77787200-77790200	Enhancers	Fetal Heart	heart
42	chr15:77787400-77789200	Enhancers	Fetal Muscle Trunk	muscle
43	chr15:77787400-77789400	Enhancers	Brain Substantia Nigra	brain
44	chr15:77787400-77789600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr15:77787400-77791600	Enhancers	Fetal Brain Female	brain
46	chr15:77787600-77791400	Enhancers	Fetal Brain Male	brain
47	chr15:77787600-77791600	Enhancers	Right Ventricle	heart
48	chr15:77787600-77792000	Enhancers	Left Ventricle	heart
49	chr15:77787600-77792400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr15:77787800-77789000	Enhancers	Brain Inferior Temporal Lobe	brain

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