Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86921307..86924428-chr2:86924488..86929340,5	MCF-7	breast:
2	chr2:86849829..86852102-chr2:86921953..86923622,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249884	Chromatin interaction
ENSG00000239305	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10186663	0.83[ASN][1000 genomes]
rs11547281	0.88[ASN][1000 genomes]
rs11889231	0.83[ASN][1000 genomes]
rs12477737	0.83[EUR][1000 genomes]
rs12997796	0.97[ASN][1000 genomes]
rs13004867	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13029597	0.88[ASN][1000 genomes]
rs1878109	0.83[ASN][1000 genomes]
rs2138396	0.83[ASN][1000 genomes]
rs2887012	0.83[ASN][1000 genomes]
rs34353387	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35129240	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35594332	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35815787	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731890	0.83[ASN][1000 genomes]
rs67535255	0.88[ASN][1000 genomes]
rs67856656	0.88[ASN][1000 genomes]
rs67864369	0.86[ASN][1000 genomes]
rs7596943	0.83[ASN][1000 genomes]
rs9309636	0.83[ASN][1000 genomes]
rs9309637	0.83[ASN][1000 genomes]
rs9309638	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86922000-86923800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:86922200-86923200	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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