Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86921307..86924428-chr2:86924488..86929340,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10186663	0.83[ASN][1000 genomes]
rs11547281	0.88[ASN][1000 genomes]
rs11889231	0.83[ASN][1000 genomes]
rs12477737	0.85[EUR][1000 genomes]
rs12997796	0.97[ASN][1000 genomes]
rs13004867	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13029597	0.88[ASN][1000 genomes]
rs1878109	0.83[ASN][1000 genomes]
rs2138396	0.83[ASN][1000 genomes]
rs2887012	0.83[ASN][1000 genomes]
rs34353387	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34933869	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35129240	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35594332	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731890	0.83[ASN][1000 genomes]
rs67535255	0.88[ASN][1000 genomes]
rs67856656	0.88[ASN][1000 genomes]
rs67864369	0.86[ASN][1000 genomes]
rs7596943	0.83[ASN][1000 genomes]
rs9309636	0.83[ASN][1000 genomes]
rs9309637	0.83[ASN][1000 genomes]
rs9309638	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86923200-86932800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:86925000-86930200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:86925000-86930200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:86925000-86930200	Weak transcription	HMEC	breast
5	chr2:86925200-86929400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:86925200-86930200	Weak transcription	NHEK	skin
7	chr2:86925400-86930200	Weak transcription	Stomach Mucosa	stomach
8	chr2:86925600-86930400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:86925600-86930400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:86928000-86930000	Weak transcription	A549	lung
11	chr2:86928000-86930600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:86928000-86931600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:86928400-86931400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:86928400-86931400	Weak transcription	Osteobl	bone

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