Variant report

Variant	rs34934597
Chromosome Location	chr2:185511577-185511578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10202700	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12693380	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12693382	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35068933	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35431480	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60170726	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738793	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591757	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7600673	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185509800-185512400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:185510400-185511800	Enhancers	HMEC	breast
3	chr2:185510400-185511800	Enhancers	NHEK	skin
4	chr2:185510600-185511600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:185510600-185511800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:185510600-185511800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:185510800-185511800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:185510800-185511800	Enhancers	NHLF	lung
9	chr2:185511200-185519600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:185511400-185511600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:185511400-185512600	Weak transcription	Fetal Intestine Small	intestine
12	chr2:185511400-185513200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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