Variant report

Variant	rs6738793
Chromosome Location	chr2:185522156-185522157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10202700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10211213	0.80[CEU][hapmap]
rs12104591	0.86[CEU][hapmap];0.92[GIH][hapmap]
rs12693380	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12693382	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12693387	1.00[ASW][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs1320080	1.00[CHD][hapmap];0.87[GIH][hapmap]
rs13384546	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap]
rs13389014	1.00[ASW][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap]
rs13414832	1.00[ASW][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap]
rs17431278	0.89[ASW][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap]
rs17508713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs17508877	0.80[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap]
rs2199882	0.80[CEU][hapmap]
rs34934597	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35068933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35431480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4544394	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap]
rs60170726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6730122	1.00[CHD][hapmap];0.94[GIH][hapmap]
rs6751335	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap]
rs6755921	0.80[CEU][hapmap]
rs7585738	1.00[CHD][hapmap];0.94[GIH][hapmap]
rs7591757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7600673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185516400-185527600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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