Variant report

Variant	rs17508877
Chromosome Location	chr2:185556071-185556072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10165596	1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs10172363	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10172501	0.91[EUR][1000 genomes]
rs10174301	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs10176668	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10180597	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10180958	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs10186035	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs10187190	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs10194277	0.95[EUR][1000 genomes]
rs10194285	0.95[EUR][1000 genomes]
rs10197098	0.95[EUR][1000 genomes]
rs10199843	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap]
rs10202700	0.80[CEU][hapmap]
rs10206254	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs10211213	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs12104591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap]
rs12693382	1.00[CHD][hapmap]
rs12693387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693389	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs12693391	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs12693395	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs12693398	0.86[EUR][1000 genomes]
rs13017390	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs1317210	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs1320080	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap]
rs13383910	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs13384546	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs13386789	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs13389014	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap]
rs13396624	0.86[EUR][1000 genomes]
rs13398732	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs13411652	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs13414832	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap]
rs13422256	0.86[EUR][1000 genomes]
rs1383307	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs1480476	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs1480477	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs1600577	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs17431132	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs17431278	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs17508713	0.80[CEU][hapmap]
rs1987025	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs2127698	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2199882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2369589	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs34713272	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35328100	0.93[EUR][1000 genomes]
rs4294964	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs4544394	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs4586602	0.88[EUR][1000 genomes]
rs62174663	0.93[EUR][1000 genomes]
rs6712125	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs6715977	0.80[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap]
rs6725125	0.95[EUR][1000 genomes]
rs6730122	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs6732176	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs6738793	0.80[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap]
rs6751335	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs6755921	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73978096	0.95[EUR][1000 genomes]
rs7558878	1.00[CHB][hapmap]
rs7568756	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs7568843	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs7569229	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs7585738	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7586454	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs7591757	0.80[CEU][hapmap]
rs7603313	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs9973668	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185545200-185557000	Weak transcription	Fetal Stomach	stomach

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