Variant report

Variant	rs1480477
Chromosome Location	chr2:185579871-185579872
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:185569754..185571937-chr2:185579552..185581214,2	K562	blood:
2	chr2:185578595..185580514-chr2:185586410..185588900,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10165596	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10172363	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10172501	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10174301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10176668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs10180597	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10180958	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10186035	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs10187190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs10194277	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10194285	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10197098	0.92[EUR][1000 genomes]
rs10199843	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10206254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10211213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12104591	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs12693387	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12693389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs12693391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs12693395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12693398	0.88[EUR][1000 genomes]
rs12693401	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs13009002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap]
rs13017390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1317210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1320080	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13383910	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13384546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13386789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs13389014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13396624	0.88[EUR][1000 genomes]
rs13398732	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13411652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap]
rs13414832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13420355	0.84[YRI][hapmap]
rs13422256	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13428955	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13429132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap]
rs1383307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1480476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1600577	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17431132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17431278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs17508877	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1987025	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2127698	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2199882	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2369589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs34713272	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35328100	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4294964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4544394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4586602	0.90[EUR][1000 genomes]
rs62174663	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6710286	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6712125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6715910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap]
rs6722425	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap]
rs6725125	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6730122	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6732176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6751335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6755921	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73978096	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7558878	1.00[CHB][hapmap]
rs7562384	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7568756	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7568843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7569229	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7585738	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7586454	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7603313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs9973668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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