Variant report

Variant	rs7558878
Chromosome Location	chr2:185729162-185729163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10165596	1.00[CHB][hapmap]
rs10167859	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10172363	1.00[CHB][hapmap]
rs10173509	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10174301	1.00[CHB][hapmap]
rs10176668	1.00[CHB][hapmap]
rs10177035	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10180597	1.00[CHB][hapmap]
rs10180958	1.00[CHB][hapmap]
rs10184629	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs10186035	1.00[CHB][hapmap]
rs10187190	1.00[CHB][hapmap]
rs10190062	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10199843	1.00[CHB][hapmap]
rs10201360	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10206254	1.00[CHB][hapmap]
rs10206265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10206426	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10211213	1.00[CHB][hapmap]
rs1038197	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs1038198	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11890843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11892742	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11892843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11901640	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs11904676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12104591	1.00[CHB][hapmap]
rs12693387	1.00[CHB][hapmap]
rs12693389	1.00[CHB][hapmap]
rs12693391	1.00[CHB][hapmap]
rs12693394	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12693395	1.00[CHB][hapmap]
rs12693396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12693397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12693401	1.00[CHB][hapmap]
rs13009002	1.00[CHB][hapmap]
rs13012514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13012893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13017390	1.00[CHB][hapmap]
rs13028349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1317210	1.00[CHB][hapmap]
rs1320080	1.00[CHB][hapmap]
rs13383910	1.00[CHB][hapmap]
rs13384546	1.00[CHB][hapmap]
rs13386789	1.00[CHB][hapmap]
rs13389014	1.00[CHB][hapmap]
rs13389241	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs13398732	1.00[CHB][hapmap]
rs13408744	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13411652	1.00[CHB][hapmap]
rs13414832	1.00[CHB][hapmap]
rs13417466	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13424507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13428955	1.00[CHB][hapmap]
rs13429132	1.00[CHB][hapmap]
rs1366844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1383307	1.00[CHB][hapmap]
rs1383309	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1480476	1.00[CHB][hapmap]
rs1480477	1.00[CHB][hapmap]
rs1480486	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs1600577	1.00[CHB][hapmap]
rs1600578	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs16826158	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs16826178	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs16826219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17431132	1.00[CHB][hapmap]
rs17431278	1.00[CHB][hapmap]
rs17508877	1.00[CHB][hapmap]
rs1987025	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2199882	1.00[CHB][hapmap]
rs2199883	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs2369589	1.00[CHB][hapmap]
rs2887514	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4278895	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4294964	1.00[CHB][hapmap]
rs4308093	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs4544394	1.00[CHB][hapmap]
rs6434100	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs6434102	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs66983648	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6709436	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6710286	1.00[CHB][hapmap]
rs6712125	1.00[CHB][hapmap]
rs6715910	1.00[CHB][hapmap]
rs6716151	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6716235	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6718067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6718759	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6720863	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6722425	1.00[CHB][hapmap]
rs6723680	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs6728615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6730122	1.00[CHB][hapmap]
rs6732176	1.00[CHB][hapmap]
rs6742299	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6747844	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs6749691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6751335	1.00[CHB][hapmap]
rs6755921	1.00[CHB][hapmap]
rs6759491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs7562384	1.00[CHB][hapmap]
rs7564941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs7568655	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7568756	1.00[CHB][hapmap]
rs7568843	1.00[CHB][hapmap]
rs7569229	1.00[CHB][hapmap]
rs7578316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7582887	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs7583953	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7584503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7585738	1.00[CHB][hapmap]
rs7586454	1.00[CHB][hapmap]
rs7588753	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7588907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7603313	1.00[CHB][hapmap]
rs7605689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7608386	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9973631	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9973668	1.00[CHB][hapmap]
rs9973969	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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