Variant report

Variant	rs13389241
Chromosome Location	chr2:185577236-185577237
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52966884..52967402-chr2:185577216..185577716,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10167859	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10173509	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10177035	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10184629	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10190062	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10201360	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10206265	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10206426	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs1038197	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1038198	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11890843	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11892742	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11892843	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs11899082	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11901640	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11904676	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs12693394	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs12693396	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs12693397	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12693400	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs13012514	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13012893	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13028349	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13383910	1.00[YRI][hapmap]
rs13408744	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs13417466	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13424507	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1366844	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1383309	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1480486	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs1600578	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16826158	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16826178	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs16826219	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1987025	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2199883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2887514	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4278895	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4308093	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs6434100	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs6434102	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs6709436	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs6716151	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6716235	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs6718067	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs6718759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6720863	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6723680	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6728615	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6742299	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs6747844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6749691	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6759491	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7558878	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7564941	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs7568655	0.95[CEU][hapmap];0.85[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7578316	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7582887	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs7583953	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7584503	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7588753	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7588907	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs7605689	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7608386	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs9973631	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9973969	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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