Variant report

Variant	rs10173509
Chromosome Location	chr2:185553260-185553261
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10167859	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs10177035	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10184629	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190062	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10201360	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap]
rs10206265	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs10206426	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs1038197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1038198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11890843	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11892742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892843	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs11901640	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904676	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs12693394	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12693396	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[TSI][hapmap]
rs12693397	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13012514	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13012893	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13028349	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13383910	1.00[YRI][hapmap]
rs13389241	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13408744	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs13417466	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13424507	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1366844	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs1383309	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs1480486	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs1600578	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16826158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16826178	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs16826219	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1987025	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2199883	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs2887514	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4278895	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4308093	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6434100	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs6434102	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs6709436	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs6716151	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6716235	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];0.86[MKK][hapmap];0.90[TSI][hapmap]
rs6718759	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720863	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6723680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728615	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6742299	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap]
rs6747844	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6749691	0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6759491	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7558878	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7564941	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs7568655	0.90[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.81[MEX][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7578316	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7582887	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7583953	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs7588753	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7588907	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs7605689	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7608386	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs9973631	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9973969	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185545200-185557000	Weak transcription	Fetal Stomach	stomach

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