Variant report

Variant	rs10172501
Chromosome Location	chr2:185630341-185630342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10165596	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10174301	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10187190	0.88[EUR][1000 genomes]
rs10194277	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10194285	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10197098	0.86[EUR][1000 genomes]
rs10206254	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10211213	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12693387	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12693395	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12693398	0.88[EUR][1000 genomes]
rs13017390	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1317210	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13384546	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13386789	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13396624	0.88[EUR][1000 genomes]
rs13398732	0.88[EUR][1000 genomes]
rs13422256	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1383307	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17431132	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17508877	0.91[EUR][1000 genomes]
rs2127698	0.91[EUR][1000 genomes]
rs2199882	0.92[EUR][1000 genomes]
rs34713272	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35328100	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4294964	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4544394	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4586602	0.89[EUR][1000 genomes]
rs62174663	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6712125	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6725125	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6732176	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6751335	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6755921	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73978096	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7568843	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9973668	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185629800-185630600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:185629800-185631200	Active TSS	Monocytes-CD14+_RO01746	blood
3	chr2:185630000-185630600	Active TSS	Adipose Nuclei	Adipose
4	chr2:185630000-185630600	Active TSS	Brain Anterior Caudate	brain
5	chr2:185630000-185630600	Active TSS	Brain Cingulate Gyrus	brain
6	chr2:185630000-185630600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr2:185630000-185630800	Active TSS	Primary monocytes fromperipheralblood	blood
8	chr2:185630000-185630800	Active TSS	Liver	Liver
9	chr2:185630000-185630800	Active TSS	Duodenum Mucosa	Duodenum
10	chr2:185630200-185630400	Enhancers	Spleen	Spleen
11	chr2:185630200-185630600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:185630200-185630600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:185630200-185630600	Active TSS	Primary B cells from peripheral blood	blood
14	chr2:185630200-185630600	Active TSS	Brain Hippocampus Middle	brain
15	chr2:185630200-185630600	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr2:185630200-185630800	Active TSS	A549	lung
17	chr2:185630200-185631200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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