Variant report

Variant	rs34942378
Chromosome Location	chr11:47096981-47096982
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10838651	1.00[AFR][1000 genomes]
rs35959877	0.85[AMR][1000 genomes]
rs7101470	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34942378	MADD	cis	frontal cortex	BrainEAC

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47073800-47100200	Weak transcription	Thymus	Thymus
2	chr11:47077600-47113200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:47078000-47097000	Weak transcription	Aorta	Aorta
4	chr11:47080800-47103000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:47083200-47100600	Weak transcription	NH-A	brain
6	chr11:47084600-47098400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:47085800-47102400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:47089400-47097000	Weak transcription	Gastric	stomach
9	chr11:47089400-47107000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:47089400-47120800	Weak transcription	Hela-S3	cervix
11	chr11:47093000-47100000	Weak transcription	Fetal Kidney	kidney
12	chr11:47093600-47101400	Weak transcription	Fetal Intestine Small	intestine
13	chr11:47093800-47100000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:47093800-47103800	Weak transcription	Fetal Intestine Large	intestine
15	chr11:47093800-47105000	Weak transcription	HSMM	muscle
16	chr11:47093800-47105400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:47094000-47097400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:47094000-47098400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:47094000-47104000	Weak transcription	Fetal Stomach	stomach
20	chr11:47094000-47105200	Weak transcription	NHEK	skin
21	chr11:47094000-47116400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:47094000-47125200	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:47095000-47100600	Weak transcription	Fetal Lung	lung

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