Variant report

Variant	rs34945107
Chromosome Location	chr15:33427673-33427674
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33357010..33360956-chr15:33425226..33427691,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12902782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12902884	1.00[AFR][1000 genomes]
rs12907653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12909898	1.00[AFR][1000 genomes]
rs12911519	1.00[AFR][1000 genomes]
rs12914708	1.00[AFR][1000 genomes]
rs12915870	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16965470	1.00[ASN][1000 genomes]
rs17816892	1.00[ASN][1000 genomes]
rs17816898	1.00[ASN][1000 genomes]
rs17816904	0.90[ASN][1000 genomes]
rs34053978	1.00[AFR][1000 genomes]
rs34171151	1.00[AFR][1000 genomes]
rs34292665	1.00[AFR][1000 genomes]
rs34331348	1.00[AFR][1000 genomes]
rs34410148	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34633722	0.90[ASN][1000 genomes]
rs34718785	1.00[AFR][1000 genomes]
rs34922363	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35060601	1.00[ASN][1000 genomes]
rs35158642	1.00[AFR][1000 genomes]
rs35187364	0.90[ASN][1000 genomes]
rs35414549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35493298	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35695671	0.90[ASN][1000 genomes]
rs35836585	0.90[ASN][1000 genomes]
rs35877923	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36010988	0.90[ASN][1000 genomes]
rs36014025	1.00[ASN][1000 genomes]
rs71462838	1.00[AFR][1000 genomes]
rs71462844	1.00[AFR][1000 genomes]
rs71462846	1.00[AFR][1000 genomes]
rs71462848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462849	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33419200-33428600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:33419200-33430000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:33419200-33430400	Weak transcription	Psoas Muscle	Psoas
4	chr15:33420600-33434800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:33423600-33428400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr15:33423600-33428800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:33424400-33430000	Weak transcription	Fetal Lung	lung
8	chr15:33424400-33440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:33424600-33429800	Weak transcription	Brain Angular Gyrus	brain
10	chr15:33425000-33430000	Weak transcription	Fetal Stomach	stomach
11	chr15:33425400-33430000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:33425600-33430200	Weak transcription	Brain Substantia Nigra	brain
13	chr15:33426600-33427800	Enhancers	Fetal Muscle Leg	muscle
14	chr15:33427200-33428200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr15:33427200-33428200	Enhancers	Fetal Heart	heart
16	chr15:33427200-33428200	Enhancers	HSMMtube	muscle
17	chr15:33427200-33428400	Enhancers	Colon Smooth Muscle	Colon
18	chr15:33427200-33428600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:33427200-33428800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:33427200-33431400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:33427400-33428000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:33427400-33428400	Enhancers	HSMM	muscle
23	chr15:33427600-33427800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:33427600-33427800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:33427600-33427800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:33427600-33427800	Enhancers	Brain Hippocampus Middle	brain
27	chr15:33427600-33427800	Enhancers	Lung	lung
28	chr15:33427600-33427800	Enhancers	Right Atrium	heart
29	chr15:33427600-33428000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:33427600-33428000	Enhancers	Left Ventricle	heart
31	chr15:33427600-33428200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:33427600-33428200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr15:33427600-33428200	Enhancers	Brain Cingulate Gyrus	brain
34	chr15:33427600-33428200	Enhancers	HMEC	breast
35	chr15:33427600-33428400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr15:33427600-33428400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr15:33427600-33428600	Enhancers	Adipose Nuclei	Adipose
38	chr15:33427600-33428600	Flanking Active TSS	Osteobl	bone
39	chr15:33427600-33428800	Enhancers	NHDF-Ad	bronchial
40	chr15:33427600-33428800	Enhancers	NHLF	lung
41	chr15:33427600-33429000	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr15:33427600-33429800	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links