Variant report

Variant	rs17816898
Chromosome Location	chr15:33430230-33430231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12902884	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12903814	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12915870	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16965470	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17816892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17816904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34633722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34922363	1.00[ASN][1000 genomes]
rs34945107	1.00[ASN][1000 genomes]
rs35060601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35187364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35493298	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35695671	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35836585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35991626	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36010988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36014025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462848	1.00[ASN][1000 genomes]
rs71462852	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71462853	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7171510	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173052	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73380645	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33419200-33430400	Weak transcription	Psoas Muscle	Psoas
2	chr15:33420600-33434800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:33424400-33440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:33427200-33431400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:33427800-33445400	Weak transcription	Right Atrium	heart
6	chr15:33429200-33430800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:33429400-33430800	Enhancers	Brain Hippocampus Middle	brain
8	chr15:33429400-33431000	Enhancers	Brain Cingulate Gyrus	brain
9	chr15:33429800-33430600	Enhancers	Brain Angular Gyrus	brain
10	chr15:33429800-33430800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr15:33429800-33430800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:33430000-33430400	Enhancers	HSMM	muscle
13	chr15:33430000-33430400	Enhancers	NHLF	lung
14	chr15:33430000-33430600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:33430000-33430600	Enhancers	Fetal Lung	lung
16	chr15:33430000-33430600	Enhancers	Fetal Stomach	stomach
17	chr15:33430000-33430800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:33430000-33430800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:33430000-33430800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr15:33430000-33430800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr15:33430000-33431200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:33430200-33430400	Enhancers	Osteobl	bone
23	chr15:33430200-33430600	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr15:33430200-33430800	Enhancers	Brain Substantia Nigra	brain

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