Variant report

Variant	rs12903814
Chromosome Location	chr15:33449902-33449903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12901507	0.82[EUR][1000 genomes]
rs12902884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12915870	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16965470	0.83[EUR][1000 genomes]
rs17816892	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17816898	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17816904	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34633722	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35060601	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35187364	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35493298	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35695671	0.84[EUR][1000 genomes]
rs35836585	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35991626	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36010988	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36014025	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61744880	0.83[ASN][1000 genomes]
rs71462850	0.80[ASN][1000 genomes]
rs71462852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171510	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7173052	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33441200-33451800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:33443800-33450200	Weak transcription	Fetal Intestine Large	intestine
3	chr15:33445600-33453400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:33446800-33450200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:33447000-33454600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:33447800-33452400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:33447800-33453200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:33448400-33450000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:33449600-33450400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:33449600-33451200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:33449600-33453600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:33449800-33450200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:33449800-33450200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:33449800-33450200	Enhancers	Placenta	Placenta
15	chr15:33449800-33450200	Enhancers	Lung	lung
16	chr15:33449800-33450200	Enhancers	NHEK	skin
17	chr15:33449800-33450400	Enhancers	HMEC	breast
18	chr15:33449800-33450400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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