Variant report

Variant	rs71462852
Chromosome Location	chr15:33453557-33453558
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12901507	0.82[EUR][1000 genomes]
rs12902884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12903814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915870	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16965470	0.83[EUR][1000 genomes]
rs17816892	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17816898	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17816904	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34633722	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35060601	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35187364	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35493298	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35695671	0.84[EUR][1000 genomes]
rs35836585	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35991626	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36010988	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36014025	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61744880	0.83[ASN][1000 genomes]
rs71462850	0.80[ASN][1000 genomes]
rs71462853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171510	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7173052	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33447000-33454600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:33449600-33453600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:33452000-33453800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr15:33452200-33453600	Enhancers	Colon Smooth Muscle	Colon
5	chr15:33452400-33453600	Enhancers	Psoas Muscle	Psoas
6	chr15:33452400-33453800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:33452400-33453800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:33452400-33453800	Enhancers	Stomach Smooth Muscle	stomach
9	chr15:33452800-33454600	Weak transcription	GM12878-XiMat	blood
10	chr15:33452800-33462200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:33453000-33454600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr15:33453200-33454200	Weak transcription	Adipose Nuclei	Adipose
13	chr15:33453400-33453600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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