Variant report

Variant	rs34959352
Chromosome Location	chr15:58777326-58777327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12909642	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12914552	0.84[EUR][1000 genomes]
rs17301781	0.91[AMR][1000 genomes]
rs1869143	0.88[AMR][1000 genomes]
rs34838631	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62001840	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv457173	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv569600	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv904268	chr15:58763678-58803225	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv3388606	chr15:58774960-58779258	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv827345	chr15:58776438-58777815	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv15713	chr15:58776459-58777765	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58769000-58778600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:58769400-58778800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:58769600-58780000	Weak transcription	Right Atrium	heart
4	chr15:58770400-58778400	Weak transcription	Pancreas	Pancrea
5	chr15:58770400-58779800	Weak transcription	Left Ventricle	heart
6	chr15:58772400-58779800	Weak transcription	Fetal Kidney	kidney
7	chr15:58774600-58780200	Enhancers	HSMMtube	muscle
8	chr15:58775000-58780600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr15:58775400-58777600	Enhancers	HSMM	muscle
10	chr15:58775400-58778600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:58775400-58779200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:58775600-58778200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:58775600-58778200	Enhancers	Lung	lung
14	chr15:58775600-58780400	Enhancers	Fetal Thymus	thymus
15	chr15:58775600-58780800	Enhancers	Primary T cells fromperipheralblood	blood
16	chr15:58775600-58781000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:58775800-58780000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:58776000-58778200	Enhancers	Primary hematopoietic stem cells	blood
19	chr15:58776200-58778200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:58776400-58777400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr15:58776400-58777600	Enhancers	Primary B cells from cord blood	blood
22	chr15:58776400-58778600	Enhancers	Spleen	Spleen
23	chr15:58776600-58778200	Enhancers	Thymus	Thymus
24	chr15:58776600-58778600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr15:58776600-58782400	Weak transcription	Right Ventricle	heart
26	chr15:58776800-58777800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr15:58777000-58777400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr15:58777000-58777400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:58777000-58777600	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr15:58777000-58777600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr15:58777000-58777600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr15:58777200-58777400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:58777200-58777400	Flanking Active TSS	Dnd41	blood
34	chr15:58777200-58777600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr15:58777200-58777600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr15:58777200-58777600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr15:58777200-58777600	Enhancers	Duodenum Mucosa	Duodenum
38	chr15:58777200-58777800	Enhancers	Adipose Nuclei	Adipose
39	chr15:58777200-58779000	Enhancers	K562	blood
40	chr15:58777200-58779400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr15:58777200-58780400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:58777200-58780600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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