Variant report

Variant	rs34969511
Chromosome Location	chr4:31101470-31101471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13111595	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13129032	0.93[ASN][1000 genomes]
rs13131390	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35365933	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61794125	0.81[EUR][1000 genomes]
rs61794126	0.81[EUR][1000 genomes]
rs71598140	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31088800-31105200	Weak transcription	Fetal Lung	lung
2	chr4:31099400-31102600	Enhancers	Fetal Heart	heart
3	chr4:31100800-31102200	Enhancers	Fetal Brain Female	brain
4	chr4:31101000-31101600	Enhancers	Colon Smooth Muscle	Colon
5	chr4:31101000-31102000	Weak transcription	Aorta	Aorta
6	chr4:31101200-31102000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:31101200-31102000	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links