Variant report

Variant	rs61794126
Chromosome Location	chr4:31088863-31088864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13110399	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13110574	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13111595	0.81[EUR][1000 genomes]
rs13130808	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13131390	0.81[EUR][1000 genomes]
rs13133529	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13151017	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1532561	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34409557	0.84[AMR][1000 genomes]
rs34969511	0.81[EUR][1000 genomes]
rs35109062	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35809812	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61276976	0.88[AMR][1000 genomes]
rs61794078	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61794079	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61794081	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61794085	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61794125	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31084000-31090000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:31085200-31092600	Enhancers	Fetal Heart	heart
3	chr4:31087000-31096000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:31087400-31089200	Enhancers	Fetal Brain Male	brain
5	chr4:31087600-31089000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr4:31087600-31090200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:31087800-31089000	Enhancers	Stomach Smooth Muscle	stomach
8	chr4:31087800-31089800	Weak transcription	NHLF	lung
9	chr4:31087800-31091400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:31088000-31091400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:31088000-31092600	Enhancers	HUVEC	blood vessel
12	chr4:31088200-31089200	Enhancers	Fetal Brain Female	brain
13	chr4:31088600-31089000	Enhancers	Aorta	Aorta
14	chr4:31088800-31089000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:31088800-31089800	Weak transcription	NH-A	brain
16	chr4:31088800-31090000	Weak transcription	Hela-S3	cervix
17	chr4:31088800-31091200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:31088800-31105200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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