Variant report

Variant	rs34992407
Chromosome Location	chr1:222940523-222940524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11490204	0.86[ASN][1000 genomes]
rs12073392	0.81[EUR][1000 genomes]
rs17474556	0.84[ASN][1000 genomes]
rs34807177	0.86[ASN][1000 genomes]
rs35554894	0.84[ASN][1000 genomes]
rs35806535	0.82[EUR][1000 genomes]
rs35968825	0.84[EUR][1000 genomes]
rs3922385	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4303078	0.90[ASN][1000 genomes]
rs4472762	0.86[ASN][1000 genomes]
rs61826471	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61837145	0.91[ASN][1000 genomes]
rs61837146	0.91[ASN][1000 genomes]
rs6683071	0.81[EUR][1000 genomes]
rs73126825	0.94[ASN][1000 genomes]
rs73126839	0.96[ASN][1000 genomes]
rs73126856	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv3369664	chr1:222935606-222958164	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222939400-222941400	Enhancers	Dnd41	blood
2	chr1:222939800-222941000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:222940000-222940800	Enhancers	Fetal Thymus	thymus
4	chr1:222940000-222941000	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:222940000-222942000	Weak transcription	Primary B cells from cord blood	blood
6	chr1:222940200-222940800	Enhancers	Primary T cells from cord blood	blood
7	chr1:222940200-222941000	Enhancers	GM12878-XiMat	blood
8	chr1:222940400-222940800	Enhancers	Thymus	Thymus
9	chr1:222940400-222941400	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links