Variant report

Variant	rs35806535
Chromosome Location	chr1:222930485-222930486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12063226	0.81[EUR][1000 genomes]
rs12073392	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749296	0.84[ASN][1000 genomes]
rs17011666	0.96[TSI][hapmap]
rs2068814	0.88[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2270707	1.00[TSI][hapmap]
rs2378606	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2378607	0.81[ASN][1000 genomes]
rs28654270	0.81[ASN][1000 genomes]
rs28765200	0.81[ASN][1000 genomes]
rs34885880	0.84[ASN][1000 genomes]
rs34992407	0.82[EUR][1000 genomes]
rs35300015	0.93[ASN][1000 genomes]
rs35968825	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61825253	0.84[ASN][1000 genomes]
rs61825254	0.81[ASN][1000 genomes]
rs61825259	0.81[ASN][1000 genomes]
rs6683071	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35806535	C1orf58	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222928000-222932400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:222928000-222932600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:222928000-222933800	Enhancers	Colon Smooth Muscle	Colon
4	chr1:222928400-222930600	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:222928400-222930800	Weak transcription	HSMMtube	muscle
6	chr1:222928400-222934200	Weak transcription	Primary B cells from cord blood	blood
7	chr1:222929200-222931200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:222930000-222933000	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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