Variant report
| Variant | rs35004449 |
|---|---|
| Chromosome Location | chr3:52852897-52852898 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:52844000-52854000 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 2 | chr3:52844200-52856600 | Weak transcription | Primary T cells from cord blood | blood |
| 3 | chr3:52844400-52857200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 4 | chr3:52844600-52856800 | Weak transcription | Fetal Intestine Small | intestine |
| 5 | chr3:52844600-52857600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 6 | chr3:52845600-52853000 | Weak transcription | Brain Germinal Matrix | brain |
| 7 | chr3:52845800-52854200 | Weak transcription | Brain Cingulate Gyrus | brain |
| 8 | chr3:52846000-52853200 | Weak transcription | Thymus | Thymus |
| 9 | chr3:52846400-52860800 | Weak transcription | Esophagus | oesophagus |
| 10 | chr3:52846800-52857000 | Weak transcription | Aorta | Aorta |
| 11 | chr3:52847000-52857400 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 12 | chr3:52847200-52861200 | Genic enhancers | Liver | Liver |
| 13 | chr3:52847400-52857000 | Weak transcription | Brain Hippocampus Middle | brain |
| 14 | chr3:52847600-52865000 | Weak transcription | Psoas Muscle | Psoas |
| 15 | chr3:52847800-52854600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 16 | chr3:52848400-52853400 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 17 | chr3:52848400-52865800 | Weak transcription | Ovary | ovary |
| 18 | chr3:52848600-52853800 | Weak transcription | Right Ventricle | heart |
| 19 | chr3:52848800-52853000 | Weak transcription | Brain Angular Gyrus | brain |
| 20 | chr3:52848800-52854200 | Weak transcription | Brain Substantia Nigra | brain |
| 21 | chr3:52849800-52853200 | Strong transcription | Skeletal Muscle Male | skeletal muscle |
| 22 | chr3:52849800-52853800 | Strong transcription | Skeletal Muscle Female | skeletal muscle |
| 23 | chr3:52850200-52868400 | Weak transcription | Colonic Mucosa | Colon |
| 24 | chr3:52850600-52857800 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 25 | chr3:52850600-52864200 | Strong transcription | Stomach Smooth Muscle | stomach |
| 26 | chr3:52850800-52854000 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
| 27 | chr3:52850800-52865400 | Strong transcription | Fetal Stomach | stomach |
| 28 | chr3:52851000-52856800 | Weak transcription | Fetal Brain Female | brain |
| 29 | chr3:52851200-52855400 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
| 30 | chr3:52851400-52853200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 31 | chr3:52851600-52853800 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
| 32 | chr3:52851600-52863400 | Strong transcription | Breast Myoepithelial Primary Cells | Breast |
| 33 | chr3:52851800-52853400 | Strong transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 34 | chr3:52851800-52855200 | Strong transcription | Brain Anterior Caudate | brain |
| 35 | chr3:52851800-52856800 | Weak transcription | Lung | lung |
| 36 | chr3:52851800-52858000 | Weak transcription | Placenta | Placenta |
| 37 | chr3:52852200-52869200 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
| 38 | chr3:52852400-52853000 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 39 | chr3:52852400-52853000 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 40 | chr3:52852400-52853400 | Weak transcription | Fetal Muscle Leg | muscle |
| 41 | chr3:52852400-52853600 | Genic enhancers | Fetal Muscle Trunk | muscle |
| 42 | chr3:52852400-52854200 | Genic enhancers | Fetal Thymus | thymus |
| 43 | chr3:52852400-52854400 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
| 44 | chr3:52852600-52853000 | Flanking Active TSS | HepG2 | liver |
| 45 | chr3:52852600-52853400 | Genic enhancers | Spleen | Spleen |
| 46 | chr3:52852600-52854000 | Weak transcription | Pancreas | Pancrea |
| 47 | chr3:52852800-52853000 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 48 | chr3:52852800-52853000 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
| 49 | chr3:52852800-52854800 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 50 | chr3:52852800-52869200 | Weak transcription | Primary B cells from cord blood | blood |
