Variant report

Variant	rs35009554
Chromosome Location	chr14:64356705-64356706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64350604..64352187-chr14:64354098..64356730,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11158520	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11850711	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12588807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588955	0.86[ASN][1000 genomes]
rs12589453	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12878037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12878348	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879374	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12881942	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12882429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12888489	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12888712	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12891546	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12894963	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33976862	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34328391	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34451919	0.86[ASN][1000 genomes]
rs34556545	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34561759	1.00[ASN][1000 genomes]
rs35033077	0.83[ASN][1000 genomes]
rs35168922	1.00[ASN][1000 genomes]
rs35302448	1.00[ASN][1000 genomes]
rs35581544	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35984502	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3818774	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4459477	1.00[ASN][1000 genomes]
rs4902250	1.00[ASN][1000 genomes]
rs6573539	0.92[EUR][1000 genomes]
rs66684280	1.00[ASN][1000 genomes]
rs67289344	1.00[ASN][1000 genomes]
rs71416319	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144308	0.86[ASN][1000 genomes]
rs7401191	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv564904	chr14:64346190-64416898	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1793389	chr14:64346190-64457224	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64327600-64360000	Weak transcription	Gastric	stomach
2	chr14:64335200-64360000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:64336800-64362800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:64337000-64357200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr14:64337000-64365200	Weak transcription	Fetal Thymus	thymus
6	chr14:64337800-64403800	Weak transcription	Thymus	Thymus
7	chr14:64339400-64366800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:64341000-64357200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:64341200-64357000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:64341200-64357200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:64341200-64357200	Weak transcription	Fetal Lung	lung
12	chr14:64341200-64357200	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:64341400-64366800	Weak transcription	Primary T cells from cord blood	blood
14	chr14:64342400-64357200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:64342600-64357400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:64342800-64357000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:64342800-64357200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:64342800-64360400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr14:64342800-64360400	Weak transcription	Hela-S3	cervix
20	chr14:64342800-64368400	Weak transcription	Esophagus	oesophagus
21	chr14:64343600-64359400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr14:64344000-64357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:64344000-64357200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:64344400-64357000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:64344400-64357400	Weak transcription	Fetal Intestine Large	intestine
26	chr14:64344600-64357200	Weak transcription	HMEC	breast
27	chr14:64344800-64357200	Weak transcription	Small Intestine	intestine
28	chr14:64345000-64356800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:64345000-64357200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:64345000-64357200	Weak transcription	Ovary	ovary
31	chr14:64345000-64357200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr14:64345200-64357200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr14:64345800-64357200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr14:64346600-64357200	Weak transcription	Fetal Brain Female	brain
35	chr14:64349400-64357600	Weak transcription	Placenta	Placenta
36	chr14:64349400-64366600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr14:64349600-64357600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:64349600-64366000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:64351400-64357000	Weak transcription	NHEK	skin
40	chr14:64351400-64357200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr14:64351400-64357400	Weak transcription	Fetal Intestine Small	intestine
42	chr14:64351400-64359400	Weak transcription	Lung	lung
43	chr14:64352000-64360400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr14:64352200-64357200	Weak transcription	Fetal Stomach	stomach
45	chr14:64352200-64360000	Weak transcription	Spleen	Spleen
46	chr14:64352800-64357000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr14:64352800-64366800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr14:64353000-64357000	Weak transcription	Stomach Mucosa	stomach
49	chr14:64353000-64357400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr14:64354400-64360000	Weak transcription	Right Atrium	heart

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