Variant report

Variant	rs35168922
Chromosome Location	chr14:64322064-64322065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64319483..64322302-chr14:64328481..64332813,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054654	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12588807	1.00[ASN][1000 genomes]
rs12588955	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12589453	0.83[ASN][1000 genomes]
rs12878037	1.00[ASN][1000 genomes]
rs12878348	1.00[ASN][1000 genomes]
rs12879374	0.86[ASN][1000 genomes]
rs12881942	1.00[ASN][1000 genomes]
rs12882429	1.00[ASN][1000 genomes]
rs12894963	1.00[ASN][1000 genomes]
rs34328391	0.86[ASN][1000 genomes]
rs34451919	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34516595	0.80[AFR][1000 genomes]
rs34556545	0.93[ASN][1000 genomes]
rs34561759	1.00[ASN][1000 genomes]
rs35009554	1.00[ASN][1000 genomes]
rs35033077	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35302448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984502	0.86[ASN][1000 genomes]
rs4459477	1.00[ASN][1000 genomes]
rs4902250	1.00[ASN][1000 genomes]
rs66684280	1.00[ASN][1000 genomes]
rs67289344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416319	1.00[ASN][1000 genomes]
rs7144308	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7401191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008527	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3355344	chr14:64268248-64323934	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64318800-64322600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr14:64319000-64322200	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr14:64319000-64322200	Active TSS	Fetal Brain Female	brain
4	chr14:64319400-64322800	Active TSS	GM12878-XiMat	blood
5	chr14:64320800-64322800	Flanking Active TSS	Dnd41	blood
6	chr14:64321000-64322800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr14:64321200-64322200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:64321200-64322200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:64321200-64322200	Weak transcription	Esophagus	oesophagus
10	chr14:64321200-64323000	Enhancers	Fetal Lung	lung
11	chr14:64321200-64323200	Enhancers	Small Intestine	intestine
12	chr14:64321200-64327000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:64321200-64333800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:64321200-64334600	Weak transcription	Pancreas	Pancrea
15	chr14:64321200-64340600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:64321400-64322200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:64321400-64322200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:64321400-64322200	Weak transcription	Lung	lung
19	chr14:64321400-64322200	Weak transcription	Right Ventricle	heart
20	chr14:64321400-64322400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:64321400-64322400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr14:64321400-64322600	Enhancers	Fetal Intestine Large	intestine
23	chr14:64321400-64322800	Enhancers	Placenta	Placenta
24	chr14:64321400-64322800	Enhancers	HepG2	liver
25	chr14:64321400-64323000	Enhancers	Fetal Heart	heart
26	chr14:64321400-64323000	Enhancers	Fetal Intestine Small	intestine
27	chr14:64321400-64323000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:64321400-64323600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:64321400-64323800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:64321400-64324200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr14:64321400-64324200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr14:64321400-64324800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr14:64321400-64324800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr14:64321400-64330600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr14:64321400-64331200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr14:64321400-64350200	Weak transcription	Fetal Stomach	stomach
37	chr14:64321600-64322200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:64321600-64322200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr14:64321600-64322200	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr14:64321600-64322200	Enhancers	HMEC	breast
41	chr14:64321600-64322400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr14:64321600-64322800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr14:64321600-64323000	Enhancers	Primary T cells from cord blood	blood
44	chr14:64321600-64323000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr14:64321600-64323400	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr14:64321600-64323800	Weak transcription	HSMM	muscle
47	chr14:64321600-64326200	Weak transcription	HSMMtube	muscle
48	chr14:64321600-64326800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr14:64321800-64322200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
50	chr14:64321800-64322400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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