Variant report

Variant	rs35019375
Chromosome Location	chr4:106900204-106900205
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106899986..106902171-chr4:106913002..106915324,2	K562	blood:
2	chr4:106893048..106895457-chr4:106896581..106900704,4	K562	blood:
3	chr14:24562244..24564068-chr4:106897955..106900240,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100889	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1108244	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1108245	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1108246	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13128995	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17036424	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17036425	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17036480	0.81[ASN][1000 genomes]
rs1893715	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1893716	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2156507	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2866784	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2866785	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28790999	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28798389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34855241	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35341779	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35686571	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35716368	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4142419	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4277780	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4345186	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4345187	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4585305	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4698952	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699206	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699207	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6812365	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6813376	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71599091	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72958841	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7662283	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs869929	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs884691	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs915880	0.90[EUR][1000 genomes]
rs915881	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs959786	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs959787	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9683620	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9683630	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9683643	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9683650	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9684387	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv290813	chr4:106897031-106900926	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106885400-106909800	Weak transcription	Aorta	Aorta
2	chr4:106897800-106900600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:106897800-106901400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:106899600-106900600	Enhancers	NHEK	skin
5	chr4:106900000-106900400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:106900000-106900400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:106900000-106900400	Enhancers	Adipose Nuclei	Adipose
8	chr4:106900000-106900600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:106900000-106900800	Enhancers	HUVEC	blood vessel
10	chr4:106900000-106901000	Enhancers	HSMMtube	muscle
11	chr4:106900000-106901000	Enhancers	Osteobl	bone
12	chr4:106900200-106900800	Enhancers	NH-A	brain
13	chr4:106900200-106901000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:106900200-106901000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:106900200-106901000	Enhancers	HSMM	muscle
16	chr4:106900200-106901400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:106900200-106901400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:106900200-106901400	Enhancers	NHDF-Ad	bronchial

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