Variant report

Variant	rs7662283
Chromosome Location	chr4:106899874-106899875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106893048..106895457-chr4:106896581..106900704,4	K562	blood:
2	chr14:24562244..24564068-chr4:106897955..106900240,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100889	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1108244	0.88[EUR][1000 genomes]
rs1108245	0.86[EUR][1000 genomes]
rs1108246	0.86[EUR][1000 genomes]
rs13128995	0.90[EUR][1000 genomes]
rs17036424	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17036425	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1893715	0.84[EUR][1000 genomes]
rs1893716	0.88[EUR][1000 genomes]
rs2156507	0.88[EUR][1000 genomes]
rs2866784	0.86[EUR][1000 genomes]
rs2866785	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28790999	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28798389	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34855241	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35019375	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35341779	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35686571	0.88[EUR][1000 genomes]
rs35716368	0.88[EUR][1000 genomes]
rs4142419	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4277780	0.88[EUR][1000 genomes]
rs4345186	0.88[EUR][1000 genomes]
rs4345187	0.86[EUR][1000 genomes]
rs4585305	0.88[EUR][1000 genomes]
rs4698952	0.88[EUR][1000 genomes]
rs4699206	0.88[EUR][1000 genomes]
rs4699207	0.88[EUR][1000 genomes]
rs6812365	0.88[EUR][1000 genomes]
rs6813376	0.86[EUR][1000 genomes]
rs71599091	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72958841	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs869929	0.90[EUR][1000 genomes]
rs884691	0.86[EUR][1000 genomes]
rs915880	0.88[EUR][1000 genomes]
rs915881	0.90[EUR][1000 genomes]
rs959786	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs959787	0.88[EUR][1000 genomes]
rs9683620	0.88[EUR][1000 genomes]
rs9683630	0.88[EUR][1000 genomes]
rs9683643	0.88[EUR][1000 genomes]
rs9683650	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv290813	chr4:106897031-106900926	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106885400-106909800	Weak transcription	Aorta	Aorta
2	chr4:106892400-106900000	Weak transcription	HSMMtube	muscle
3	chr4:106897800-106900600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:106897800-106901400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:106899000-106900000	Weak transcription	Adipose Nuclei	Adipose
6	chr4:106899600-106900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:106899600-106900600	Enhancers	NHEK	skin

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