Variant report

Variant	rs35031069
Chromosome Location	chr11:75863809-75863810
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75607508..75608588-chr11:75862991..75863892,5	MCF-7	breast:
2	chr11:75862929..75863882-chr11:76029395..76030079,4	K562	blood:
3	chr11:75607077..75608544-chr11:75862937..75863839,5	K562	blood:
4	chr11:75862934..75863810-chr11:75918354..75919268,2	K562	blood:
5	chr11:75679377..75681059-chr11:75863070..75865584,2	MCF-7	breast:
6	chr11:75855694..75857259-chr11:75861740..75864650,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10793139	0.90[ASN][1000 genomes]
rs11236626	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12222319	0.94[EUR][1000 genomes]
rs12224988	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12786836	0.82[ASN][1000 genomes]
rs2851570	0.90[EUR][1000 genomes]
rs4477460	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs612221	0.90[EUR][1000 genomes]
rs7106626	0.96[ASN][1000 genomes]
rs7129111	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71469506	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1051472	chr11:75851880-75922608	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1037940	chr11:75855316-75909619	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75833400-75872800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:75862800-75864600	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr11:75862800-75865000	Enhancers	Pancreas	Pancrea
4	chr11:75862800-75869200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:75863000-75864000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:75863000-75864000	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr11:75863000-75864000	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr11:75863000-75864000	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr11:75863000-75864000	Flanking Active TSS	K562	blood
10	chr11:75863000-75864400	Flanking Active TSS	GM12878-XiMat	blood
11	chr11:75863000-75864800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:75863000-75865000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:75863000-75865000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr11:75863000-75865200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:75863200-75864000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr11:75863200-75864000	Active TSS	Primary T cells from cord blood	blood
17	chr11:75863200-75864000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:75863200-75864200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:75863200-75864400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:75863200-75865000	Enhancers	Spleen	Spleen
21	chr11:75863200-75865000	Flanking Active TSS	HepG2	liver
22	chr11:75863400-75864000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr11:75863400-75864000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr11:75863400-75864000	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr11:75863400-75864000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr11:75863400-75864000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:75863400-75864000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr11:75863400-75864000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:75863400-75864000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
30	chr11:75863400-75864000	Flanking Active TSS	Fetal Intestine Small	intestine
31	chr11:75863400-75864000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
32	chr11:75863600-75864000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:75863600-75865000	Enhancers	Placenta	Placenta
34	chr11:75863600-75865200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:75863800-75864000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
36	chr11:75863800-75864000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
37	chr11:75863800-75864000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
38	chr11:75863800-75864000	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr11:75863800-75864000	Enhancers	Brain Anterior Caudate	brain
40	chr11:75863800-75864000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:75863800-75864000	Enhancers	Colon Smooth Muscle	Colon
42	chr11:75863800-75864000	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr11:75863800-75864000	Enhancers	Fetal Heart	heart
44	chr11:75863800-75864000	Weak transcription	Left Ventricle	heart
45	chr11:75863800-75864000	Enhancers	Ovary	ovary
46	chr11:75863800-75864000	Bivalent Enhancer	Stomach Mucosa	stomach
47	chr11:75863800-75864000	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr11:75863800-75864000	Active TSS	NH-A	brain
49	chr11:75863800-75864000	Enhancers	Osteobl	bone
50	chr11:75863800-75864200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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