Variant report

Variant	rs7129111
Chromosome Location	chr11:75865496-75865497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75864698..75867155-chr11:75871013..75872936,2	MCF-7	breast:
2	chr11:75864528..75867031-chr11:75871798..75873454,2	K562	blood:
3	chr11:75679377..75681059-chr11:75863070..75865584,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11236626	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12222319	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12223796	0.82[ASN][1000 genomes]
rs12224988	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2851570	0.86[EUR][1000 genomes]
rs35031069	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4477460	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs612221	0.86[EUR][1000 genomes]
rs7106626	0.82[ASN][1000 genomes]
rs71469506	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1051472	chr11:75851880-75922608	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1037940	chr11:75855316-75909619	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75833400-75872800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:75862800-75869200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:75863800-75865800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:75863800-75865800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:75864000-75865800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:75864000-75865800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr11:75864000-75865800	Enhancers	Adipose Nuclei	Adipose
8	chr11:75864000-75868000	Weak transcription	Fetal Heart	heart
9	chr11:75864400-75865600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr11:75864400-75868000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:75864400-75871800	Weak transcription	Right Atrium	heart
12	chr11:75864600-75872600	Weak transcription	Fetal Intestine Large	intestine
13	chr11:75864800-75868000	Weak transcription	Fetal Thymus	thymus
14	chr11:75865000-75866400	Weak transcription	Fetal Lung	lung
15	chr11:75865000-75866600	Weak transcription	Placenta	Placenta
16	chr11:75865000-75868000	Enhancers	HepG2	liver
17	chr11:75865000-75868200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:75865000-75868800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:75865000-75869000	Weak transcription	Pancreas	Pancrea
20	chr11:75865000-75869600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:75865000-75876000	Weak transcription	Spleen	Spleen
22	chr11:75865200-75868000	Weak transcription	Placenta Amnion	Placenta Amnion

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