Variant report

Variant	rs35037013
Chromosome Location	chr10:54656418-54656419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:54654118..54656757-chr17:56755700..56758164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200997	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508976	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10762898	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10824822	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10824823	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10824828	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10824829	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11003227	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11003232	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11003234	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11003235	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11003241	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11003242	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11003243	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11003245	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11003246	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11814215	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12570523	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12775588	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1891645	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1935933	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2211446	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35256266	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35483275	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4935366	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4935367	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4935368	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4935369	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61846796	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7900222	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7905883	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7918475	0.81[ASN][1000 genomes]
rs7922561	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831877	chr10:54565135-54764638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv467200	chr10:54585401-54726056	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv550905	chr10:54585401-54726056	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1041940	chr10:54621342-54737528	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54653600-54657400	Enhancers	HMEC	breast
2	chr10:54653600-54657600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:54654400-54657600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:54656000-54662800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:54656400-54657200	Enhancers	NHEK	skin

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