Variant report

Variant	rs7905883
Chromosome Location	chr10:54663658-54663659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508976	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10762898	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10824822	0.90[AMR][1000 genomes]
rs10824823	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10824828	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10824829	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11003227	0.90[AMR][1000 genomes]
rs11003232	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11003234	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11003235	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11003241	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11003242	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11003243	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11003245	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11003246	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11814215	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12570523	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12775588	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1891645	0.90[AMR][1000 genomes]
rs1935933	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2211446	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35037013	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35256266	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35483275	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4935366	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4935367	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4935368	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4935369	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61846796	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67316945	0.81[AMR][1000 genomes]
rs7900222	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7922561	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831877	chr10:54565135-54764638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv467200	chr10:54585401-54726056	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv550905	chr10:54585401-54726056	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1041940	chr10:54621342-54737528	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54660600-54663800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:54662200-54665400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:54662600-54664000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:54662600-54664200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:54662600-54664600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:54662800-54664200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:54662800-54664600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:54663200-54664000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:54663400-54663800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:54663400-54663800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr10:54663400-54664000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:54663400-54664000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:54663400-54667600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:54663600-54664000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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