Variant report

Variant	rs35044009
Chromosome Location	chr6:15963550-15963551
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15961810..15964774-chr6:15968287..15970884,4	K562	blood:
2	chr6:15884328..15886585-chr6:15962945..15965277,2	K562	blood:
3	chr6:15961633..15964973-chr6:16129383..16131878,3	K562	blood:
4	chr6:15962076..15964774-chr6:15968924..15970806,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rs_ID	r²[population]
rs13195775	0.98[EUR][1000 genomes]
rs13199017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13208445	1.00[EUR][1000 genomes]
rs16877320	0.92[EUR][1000 genomes]
rs16877358	0.96[EUR][1000 genomes]
rs2105357	0.96[EUR][1000 genomes]
rs34344891	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34966125	0.96[EUR][1000 genomes]
rs35549932	0.98[EUR][1000 genomes]
rs35625979	0.98[EUR][1000 genomes]
rs7761864	0.88[EUR][1000 genomes]
rs9370850	1.00[EUR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15960600-15964000	Enhancers	GM12878-XiMat	blood
2	chr6:15961400-15963600	Enhancers	HMEC	breast
3	chr6:15961400-15964000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:15961400-15964000	Enhancers	HUVEC	blood vessel
5	chr6:15961600-15963600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:15961600-15963600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:15961600-15963600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:15961600-15963600	Enhancers	NHEK	skin
9	chr6:15961600-15963800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:15961600-15964600	Weak transcription	K562	blood
11	chr6:15962000-15963600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:15962000-15963600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:15962000-15963600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:15962000-15963600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:15962000-15963600	Enhancers	NHDF-Ad	bronchial
16	chr6:15962400-15963600	Enhancers	NHLF	lung
17	chr6:15962600-15963600	Weak transcription	Fetal Thymus	thymus
18	chr6:15962600-15965400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:15963000-15966200	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:15963200-15966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:15963200-15969000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:15963200-15969000	Weak transcription	Placenta Amnion	Placenta Amnion

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