Variant report

Variant	rs9370850
Chromosome Location	chr6:15962288-15962289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15961810..15964774-chr6:15968287..15970884,4	K562	blood:
2	chr6:15883964..15886917-chr6:15959495..15962410,2	K562	blood:
3	chr6:15961633..15964973-chr6:16129383..16131878,3	K562	blood:
4	chr6:15962076..15964774-chr6:15968924..15970806,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rs_ID	r²[population]
rs13195775	0.98[EUR][1000 genomes]
rs13198044	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs13199017	1.00[EUR][1000 genomes]
rs13208445	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16877320	0.83[TSI][hapmap];0.92[EUR][1000 genomes]
rs16877358	0.96[EUR][1000 genomes]
rs2105357	0.96[EUR][1000 genomes]
rs34344891	0.96[EUR][1000 genomes]
rs34966125	0.96[EUR][1000 genomes]
rs35044009	1.00[EUR][1000 genomes]
rs35549932	0.98[EUR][1000 genomes]
rs35625979	0.98[EUR][1000 genomes]
rs6459433	0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs7753135	1.00[CEU][hapmap]
rs7761864	1.00[CEU][hapmap];0.88[GIH][hapmap];0.88[EUR][1000 genomes]
rs7768388	1.00[CEU][hapmap]

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15957000-15962400	Weak transcription	NHLF	lung
2	chr6:15960600-15964000	Enhancers	GM12878-XiMat	blood
3	chr6:15961400-15962600	Enhancers	Spleen	Spleen
4	chr6:15961400-15963000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:15961400-15963200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:15961400-15963200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:15961400-15963200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:15961400-15963200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:15961400-15963600	Enhancers	HMEC	breast
10	chr6:15961400-15964000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:15961400-15964000	Enhancers	HUVEC	blood vessel
12	chr6:15961600-15962800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:15961600-15963200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:15961600-15963400	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:15961600-15963600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:15961600-15963600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:15961600-15963600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:15961600-15963600	Enhancers	NHEK	skin
19	chr6:15961600-15963800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:15961600-15964600	Weak transcription	K562	blood
21	chr6:15961800-15962400	Weak transcription	Left Ventricle	heart
22	chr6:15961800-15963400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:15962000-15962400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:15962000-15962400	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:15962000-15962400	Enhancers	Lung	lung
26	chr6:15962000-15962800	Enhancers	Brain Substantia Nigra	brain
27	chr6:15962000-15963000	Enhancers	Fetal Muscle Leg	muscle
28	chr6:15962000-15963200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:15962000-15963400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:15962000-15963400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:15962000-15963400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:15962000-15963600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr6:15962000-15963600	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr6:15962000-15963600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:15962000-15963600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:15962000-15963600	Enhancers	NHDF-Ad	bronchial
37	chr6:15962200-15962400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:15962200-15962400	Enhancers	Aorta	Aorta
39	chr6:15962200-15962600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:15962200-15962600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:15962200-15962600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:15962200-15962600	Enhancers	Fetal Thymus	thymus
43	chr6:15962200-15962800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:15962200-15962800	Enhancers	Adipose Nuclei	Adipose
45	chr6:15962200-15963000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:15962200-15963200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:15962200-15963200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:15962200-15963200	Enhancers	HSMM	muscle
49	chr6:15962200-15963400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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