Variant report

Variant	rs13198044
Chromosome Location	chr6:15987077-15987078
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10080917	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208445	1.00[CEU][hapmap]
rs16877411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34268426	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34300372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34756360	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35050761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36069115	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901406	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906985	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921953	1.00[CHD][hapmap]
rs6937324	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71554549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71554550	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753135	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761864	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs7768388	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770906	1.00[ASN][1000 genomes]
rs9370850	1.00[CEU][hapmap];0.88[GIH][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15985800-15987800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:15986200-15987800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:15986200-15987800	Enhancers	K562	blood
4	chr6:15986400-15987200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:15986400-15987200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:15986400-15988400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:15986800-15987800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:15986800-15987800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:15986800-15988400	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:15986800-15989200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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