Variant report

Variant	rs6901406
Chromosome Location	chr6:15981241-15981242
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10080917	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198044	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208445	1.00[CEU][hapmap]
rs16877411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34268426	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34300372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34756360	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35050761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36069115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906985	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937324	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71554549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71554550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753135	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761864	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7768388	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770906	1.00[ASN][1000 genomes]
rs9370850	1.00[CEU][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15978000-15986400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:15978800-15986200	Weak transcription	K562	blood
3	chr6:15980200-15982600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:15980600-15981600	Enhancers	Fetal Muscle Leg	muscle
5	chr6:15980600-15981600	Enhancers	HMEC	breast
6	chr6:15980600-15981800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:15980600-15982000	Enhancers	NHEK	skin
8	chr6:15980800-15981600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:15981000-15981400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:15981000-15982600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:15981200-15981400	Enhancers	Esophagus	oesophagus
12	chr6:15981200-15981400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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