Variant report

Variant	rs35044318
Chromosome Location	chr11:121341150-121341151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121339393..121341639-chr11:121343813..121346693,2	MCF-7	breast:
2	chr11:121336740..121338546-chr11:121339651..121341207,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11600875	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11605510	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12795466	0.82[EUR][1000 genomes]
rs17245976	0.81[EUR][1000 genomes]
rs35572618	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121331600-121341200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:121333200-121343400	Enhancers	Liver	Liver
3	chr11:121337400-121343000	Weak transcription	Small Intestine	intestine
4	chr11:121337400-121347000	Weak transcription	Gastric	stomach
5	chr11:121337400-121349400	Weak transcription	Ovary	ovary
6	chr11:121337400-121350600	Weak transcription	Left Ventricle	heart
7	chr11:121337400-121358800	Weak transcription	Right Ventricle	heart
8	chr11:121337600-121342000	Weak transcription	Fetal Brain Male	brain
9	chr11:121337600-121358800	Weak transcription	Brain Germinal Matrix	brain
10	chr11:121338200-121348800	Weak transcription	Colonic Mucosa	Colon
11	chr11:121338200-121349000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:121338600-121341600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:121338600-121343800	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:121338800-121341400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:121338800-121341800	Weak transcription	Brain Angular Gyrus	brain
16	chr11:121339000-121341400	Weak transcription	Fetal Lung	lung
17	chr11:121339000-121342000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:121339000-121343200	Strong transcription	Fetal Intestine Small	intestine
19	chr11:121339000-121343800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:121339000-121349200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:121339000-121358200	Weak transcription	Aorta	Aorta
22	chr11:121339200-121341400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:121339200-121341800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:121339200-121341800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:121339200-121342000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:121339200-121343600	Weak transcription	NHEK	skin
27	chr11:121339200-121343800	Weak transcription	HMEC	breast
28	chr11:121339200-121344000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:121339200-121345600	Genic enhancers	GM12878-XiMat	blood
30	chr11:121339200-121346200	Weak transcription	Stomach Mucosa	stomach
31	chr11:121339200-121346800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr11:121339200-121347200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:121339200-121348200	Weak transcription	Pancreas	Pancrea
34	chr11:121339200-121348800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:121339200-121349000	Weak transcription	Lung	lung
36	chr11:121339200-121349000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:121339400-121345000	Strong transcription	HepG2	liver
38	chr11:121339400-121345600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
39	chr11:121339800-121341800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:121339800-121341800	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:121339800-121343800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr11:121339800-121347200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:121339800-121351000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
44	chr11:121339800-121351000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:121340000-121341600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:121340000-121348200	Weak transcription	Esophagus	oesophagus
47	chr11:121340000-121349000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:121340200-121342600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:121340200-121344000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr11:121340400-121341200	Genic enhancers	Brain Substantia Nigra	brain

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