Variant report

Variant	rs17245976
Chromosome Location	chr11:121365720-121365721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11218313	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs11600231	0.86[AMR][1000 genomes]
rs11600875	0.82[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[EUR][1000 genomes]
rs11601559	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs11605510	0.82[EUR][1000 genomes]
rs12795466	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12798486	1.00[CHD][hapmap]
rs35044318	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
2	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
3	chr11:121350200-121367800	Weak transcription	Fetal Kidney	kidney
4	chr11:121350400-121393200	Weak transcription	Gastric	stomach
5	chr11:121350800-121368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:121351200-121366600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:121351400-121384600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:121352800-121377600	Strong transcription	HepG2	liver
9	chr11:121353600-121367200	Weak transcription	Fetal Lung	lung
10	chr11:121353600-121377000	Weak transcription	Pancreas	Pancrea
11	chr11:121353800-121374200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:121358800-121366800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:121358800-121367400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:121359000-121365800	Weak transcription	Brain Angular Gyrus	brain
15	chr11:121359000-121367800	Weak transcription	Brain Substantia Nigra	brain
16	chr11:121359200-121367600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:121359200-121367600	Weak transcription	Ovary	ovary
18	chr11:121359200-121367800	Weak transcription	Aorta	Aorta
19	chr11:121359200-121369800	Weak transcription	Left Ventricle	heart
20	chr11:121359200-121384200	Weak transcription	Fetal Stomach	stomach
21	chr11:121359400-121367400	Weak transcription	Brain Anterior Caudate	brain
22	chr11:121359400-121367600	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:121359600-121367800	Weak transcription	Spleen	Spleen
24	chr11:121359800-121377000	Weak transcription	Esophagus	oesophagus
25	chr11:121360600-121367000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:121360600-121368400	Weak transcription	Brain Germinal Matrix	brain
27	chr11:121360800-121367600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:121360800-121369800	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:121360800-121384400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:121362000-121367600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:121362400-121366800	Weak transcription	Fetal Brain Female	brain
32	chr11:121362800-121367800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:121362800-121368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:121364000-121375800	Strong transcription	Liver	Liver
35	chr11:121364200-121366400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:121364200-121366600	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr11:121364400-121365800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr11:121364400-121366400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:121364400-121366400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr11:121364600-121365800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr11:121364600-121365800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:121364600-121366000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:121364600-121366400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:121364800-121366000	Enhancers	Primary hematopoietic stem cells	blood
45	chr11:121364800-121366200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:121365000-121365800	Enhancers	H1 Cell Line	embryonic stem cell
47	chr11:121365000-121365800	Enhancers	H9 Cell Line	embryonic stem cell
48	chr11:121365000-121365800	Enhancers	Fetal Thymus	thymus
49	chr11:121365000-121365800	Genic enhancers	Dnd41	blood
50	chr11:121365000-121365800	Enhancers	HMEC	breast

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