Variant report

Variant	rs11601559
Chromosome Location	chr11:121412837-121412838
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121410810..121412961-chr11:121413789..121415504,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11218322	1.00[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11600231	1.00[CEU][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11607927	1.00[YRI][hapmap]
rs17245976	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs4338539	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71486385	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11601559	MIR100HG	cis	lymphoblastoid	seeQTL

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121385600-121418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:121391400-121437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:121392400-121414800	Weak transcription	Stomach Mucosa	stomach
4	chr11:121393400-121414200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:121393600-121415400	Weak transcription	Colonic Mucosa	Colon
6	chr11:121395200-121414000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:121395200-121414400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:121395200-121434800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:121395400-121424600	Weak transcription	Gastric	stomach
10	chr11:121396400-121414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:121396600-121414200	Weak transcription	Pancreas	Pancrea
13	chr11:121396600-121437600	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:121396800-121414000	Weak transcription	Esophagus	oesophagus
15	chr11:121396800-121414200	Weak transcription	Spleen	Spleen
16	chr11:121396800-121414400	Weak transcription	Fetal Lung	lung
17	chr11:121396800-121415400	Weak transcription	Fetal Stomach	stomach
18	chr11:121396800-121417400	Weak transcription	Aorta	Aorta
19	chr11:121396800-121425400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:121397000-121434800	Weak transcription	Fetal Kidney	kidney
21	chr11:121399000-121443200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:121401800-121414400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:121403200-121414000	Weak transcription	Fetal Intestine Large	intestine
24	chr11:121403200-121414200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:121404600-121437200	Weak transcription	Lung	lung
26	chr11:121404800-121414200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:121404800-121417400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:121405400-121414000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:121405400-121414000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:121405400-121414200	Weak transcription	Brain Anterior Caudate	brain
31	chr11:121405400-121421000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:121405600-121437400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:121405800-121420800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:121406200-121414200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:121406200-121417400	Weak transcription	Brain Angular Gyrus	brain
36	chr11:121406200-121423400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:121406800-121414000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:121406800-121414400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:121407000-121414400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
41	chr11:121407800-121414000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:121408400-121414200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:121408400-121414400	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:121408600-121414000	Weak transcription	Fetal Intestine Small	intestine
45	chr11:121408600-121414200	Weak transcription	Brain Substantia Nigra	brain
46	chr11:121408800-121414200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:121408800-121414200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:121408800-121414200	Weak transcription	Thymus	Thymus
49	chr11:121408800-121416800	Weak transcription	Fetal Brain Female	brain
50	chr11:121409200-121414000	Weak transcription	Rectal Mucosa Donor 31	rectum

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